Simplify and factorize a few functions
This patch factorizes some duplicated code. It also simplifies the way times are stored to prepare next patch.master
parent
e5c8a11769
commit
8c727fa99c
122
src/ior-output.c
122
src/ior-output.c
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@ -11,8 +11,6 @@
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extern char **environ;
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static struct results *bw_values(int reps, IOR_results_t * measured, int offset, double *vals);
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static struct results *ops_values(int reps, IOR_results_t * measured, int offset, IOR_offset_t transfer_size, double *vals);
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static double mean_of_array_of_doubles(double *values, int len);
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static void PPDouble(int leftjustify, double number, char *append);
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static void PrintNextToken();
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@ -456,7 +454,55 @@ void ShowSetup(IOR_param_t *params)
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fflush(out_resultfile);
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}
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static struct results *bw_ops_values(const int reps, IOR_results_t *measured,
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const int offset, IOR_offset_t transfer_size,
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const double *vals)
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{
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struct results *r;
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int i;
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r = (struct results *)malloc(sizeof(struct results)
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+ (reps * sizeof(double)));
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if (r == NULL)
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ERR("malloc failed");
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r->val = (double *)&r[1];
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for (i = 0; i < reps; i++, measured++) {
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r->val[i] = (double) *((IOR_offset_t*) ((char*)measured + offset))
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/ transfer_size / vals[i];
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if (i == 0) {
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r->min = r->val[i];
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r->max = r->val[i];
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r->sum = 0.0;
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}
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r->min = MIN(r->min, r->val[i]);
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r->max = MAX(r->max, r->val[i]);
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r->sum += r->val[i];
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}
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r->mean = r->sum / reps;
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r->var = 0.0;
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for (i = 0; i < reps; i++) {
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r->var += pow((r->mean - r->val[i]), 2);
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}
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r->var = r->var / reps;
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r->sd = sqrt(r->var);
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return r;
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}
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static struct results *bw_values(const int reps, IOR_results_t *measured,
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const int offset, const double *vals)
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{
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return bw_ops_values(reps, measured, offset, 1, vals);
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}
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static struct results *ops_values(const int reps, IOR_results_t *measured,
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const int offset, IOR_offset_t transfer_size,
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const double *vals)
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{
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return bw_ops_values(reps, measured, offset, transfer_size, vals);
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}
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/*
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* Summarize results
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@ -735,78 +781,6 @@ static void PPDouble(int leftjustify, double number, char *append)
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fprintf(out_resultfile, format, number, append);
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}
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static struct results *bw_values(int reps, IOR_results_t * measured, int offset, double *vals)
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{
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struct results *r;
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int i;
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r = (struct results *) malloc(sizeof(struct results) + (reps * sizeof(double)));
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if (r == NULL)
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ERR("malloc failed");
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r->val = (double *)&r[1];
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for (i = 0; i < reps; i++, measured++) {
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r->val[i] = (double) *((IOR_offset_t*) ((char*)measured + offset)) / vals[i];
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if (i == 0) {
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r->min = r->val[i];
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r->max = r->val[i];
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r->sum = 0.0;
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}
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r->min = MIN(r->min, r->val[i]);
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r->max = MAX(r->max, r->val[i]);
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r->sum += r->val[i];
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}
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r->mean = r->sum / reps;
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r->var = 0.0;
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for (i = 0; i < reps; i++) {
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r->var += pow((r->mean - r->val[i]), 2);
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}
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r->var = r->var / reps;
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r->sd = sqrt(r->var);
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return r;
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}
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static struct results *ops_values(int reps, IOR_results_t * measured, int offset,
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IOR_offset_t transfer_size,
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double *vals)
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{
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struct results *r;
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int i;
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r = (struct results *)malloc(sizeof(struct results)
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+ (reps * sizeof(double)));
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if (r == NULL)
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ERR("malloc failed");
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r->val = (double *)&r[1];
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for (i = 0; i < reps; i++, measured++) {
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r->val[i] = (double) *((IOR_offset_t*) ((char*)measured + offset))
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/ transfer_size / vals[i];
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if (i == 0) {
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r->min = r->val[i];
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r->max = r->val[i];
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r->sum = 0.0;
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}
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r->min = MIN(r->min, r->val[i]);
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r->max = MAX(r->max, r->val[i]);
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r->sum += r->val[i];
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}
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r->mean = r->sum / reps;
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r->var = 0.0;
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for (i = 0; i < reps; i++) {
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r->var += pow((r->mean - r->val[i]), 2);
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}
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r->var = r->var / reps;
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r->sd = sqrt(r->var);
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return r;
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}
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static double mean_of_array_of_doubles(double *values, int len)
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{
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double tot = 0.0;
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271
src/ior.c
271
src/ior.c
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@ -36,6 +36,7 @@
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#include "utilities.h"
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#include "parse_options.h"
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#define IOR_NB_TIMERS 6
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/* file scope globals */
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extern char **environ;
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@ -48,8 +49,9 @@ static char **ParseFileName(char *, int *);
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static void InitTests(IOR_test_t * , MPI_Comm);
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static void TestIoSys(IOR_test_t *);
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static void ValidateTests(IOR_param_t *);
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static IOR_offset_t WriteOrRead(IOR_param_t * test, IOR_results_t * results, void *fd, int access, IOR_io_buffers* ioBuffers);
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static void WriteTimes(IOR_param_t *, double **, int, int);
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static IOR_offset_t WriteOrRead(IOR_param_t *test, IOR_results_t *results,
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void *fd, const int access,
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IOR_io_buffers *ioBuffers);
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IOR_test_t * ior_run(int argc, char **argv, MPI_Comm world_com, FILE * world_out){
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IOR_test_t *tests_head;
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@ -256,32 +258,23 @@ DisplayOutliers(int numTasks,
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/*
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* Check for outliers in start/end times and elapsed create/xfer/close times.
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*/
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static void CheckForOutliers(IOR_param_t * test, double **timer, int rep,
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int access)
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static void
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CheckForOutliers(IOR_param_t *test, const double *timer, const int access)
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{
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int shift;
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if (access == WRITE) {
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shift = 0;
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} else { /* READ */
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shift = 6;
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}
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DisplayOutliers(test->numTasks, timer[shift + 0][rep],
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DisplayOutliers(test->numTasks, timer[0],
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"start time", access, test->outlierThreshold);
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DisplayOutliers(test->numTasks,
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timer[shift + 1][rep] - timer[shift + 0][rep],
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timer[1] - timer[0],
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"elapsed create time", access, test->outlierThreshold);
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DisplayOutliers(test->numTasks,
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timer[shift + 3][rep] - timer[shift + 2][rep],
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timer[3] - timer[2],
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"elapsed transfer time", access,
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test->outlierThreshold);
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DisplayOutliers(test->numTasks,
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timer[shift + 5][rep] - timer[shift + 4][rep],
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timer[5] - timer[4],
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"elapsed close time", access, test->outlierThreshold);
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DisplayOutliers(test->numTasks, timer[shift + 5][rep], "end time",
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DisplayOutliers(test->numTasks, timer[5], "end time",
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access, test->outlierThreshold);
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}
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/*
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@ -848,54 +841,46 @@ static char *PrependDir(IOR_param_t * test, char *rootDir)
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/*
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* Reduce test results, and show if verbose set.
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*/
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static void ReduceIterResults(IOR_test_t *test, double **timer, int rep,
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int access)
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static void
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ReduceIterResults(IOR_test_t *test, double *timer, const int rep, const int access)
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{
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double reduced[12] = { 0 };
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double diff[6];
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double *diff_subset;
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double totalTime;
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double bw;
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int i;
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MPI_Op op;
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double reduced[IOR_NB_TIMERS] = { 0 };
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double diff[IOR_NB_TIMERS / 2 + 1];
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double totalTime;
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double bw;
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int i;
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MPI_Op op;
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assert(access == WRITE || access == READ);
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assert(access == WRITE || access == READ);
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/* Find the minimum start time of the even numbered timers, and the
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maximum finish time for the odd numbered timers */
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for (i = 0; i < 12; i++) {
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for (i = 0; i < IOR_NB_TIMERS; i++) {
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op = i % 2 ? MPI_MAX : MPI_MIN;
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MPI_CHECK(MPI_Reduce(&timer[i][rep], &reduced[i], 1, MPI_DOUBLE,
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MPI_CHECK(MPI_Reduce(&timer[i], &reduced[i], 1, MPI_DOUBLE,
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op, 0, testComm), "MPI_Reduce()");
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}
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if (rank != 0) {
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/* Only rank 0 tallies and prints the results. */
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return;
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}
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/* Only rank 0 tallies and prints the results. */
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if (rank != 0)
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return;
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/* Calculate elapsed times and throughput numbers */
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for (i = 0; i < 6; i++) {
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diff[i] = reduced[2 * i + 1] - reduced[2 * i];
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}
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if (access == WRITE) {
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totalTime = reduced[5] - reduced[0];
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test->results[rep].writeTime = totalTime;
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diff_subset = &diff[0];
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} else { /* READ */
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totalTime = reduced[11] - reduced[6];
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test->results[rep].readTime = totalTime;
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diff_subset = &diff[3];
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}
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/* Calculate elapsed times and throughput numbers */
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for (i = 0; i < IOR_NB_TIMERS / 2; i++)
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diff[i] = reduced[2 * i + 1] - reduced[2 * i];
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if (verbose < VERBOSE_0) {
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return;
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}
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totalTime = reduced[5] - reduced[0];
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bw = (double)test->results[rep].aggFileSizeForBW / totalTime;
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double *time = (access == WRITE) ? &test->results[rep].writeTime :
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&test->results[rep].readTime;
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PrintReducedResult(test, access, bw, diff_subset, totalTime, rep);
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*time = totalTime;
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if (verbose < VERBOSE_0)
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return;
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bw = (double)test->results[rep].aggFileSizeForBW / totalTime;
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PrintReducedResult(test, access, bw, diff, totalTime, rep);
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}
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/*
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return buf;
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}
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/*
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* Write times taken during each iteration of the test.
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*/
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static void
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WriteTimes(IOR_param_t *test, const double *timer, const int iteration,
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const int access)
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{
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char timerName[MAX_STR];
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for (int i = 0; i < IOR_NB_TIMERS; i++) {
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if (access == WRITE) {
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switch (i) {
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case 0:
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strcpy(timerName, "write open start");
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break;
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case 1:
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strcpy(timerName, "write open stop");
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break;
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case 2:
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strcpy(timerName, "write start");
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break;
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case 3:
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strcpy(timerName, "write stop");
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break;
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case 4:
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strcpy(timerName, "write close start");
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break;
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case 5:
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strcpy(timerName, "write close stop");
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break;
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default:
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strcpy(timerName, "invalid timer");
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break;
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}
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}
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else {
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switch (i) {
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case 0:
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strcpy(timerName, "read open start");
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break;
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case 1:
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strcpy(timerName, "read open stop");
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break;
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case 2:
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strcpy(timerName, "read start");
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break;
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case 3:
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strcpy(timerName, "read stop");
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break;
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case 4:
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strcpy(timerName, "read close start");
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break;
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case 5:
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strcpy(timerName, "read close stop");
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break;
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default:
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strcpy(timerName, "invalid timer");
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break;
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}
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}
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fprintf(out_logfile, "Test %d: Iter=%d, Task=%d, Time=%f, %s\n",
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test->id, iteration, (int)rank, timer[i],
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timerName);
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}
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}
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/*
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* Using the test parameters, run iteration(s) of single test.
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*/
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@ -1125,10 +1175,10 @@ static void TestIoSys(IOR_test_t *test)
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IOR_param_t *params = &test->params;
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IOR_results_t *results = test->results;
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char testFileName[MAX_STR];
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double *timer[12];
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double timer[IOR_NB_TIMERS];
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double startTime;
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int pretendRank;
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int i, rep;
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int rep;
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void *fd;
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MPI_Group orig_group, new_group;
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int range[3];
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}
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params->tasksPerNode = CountTasksPerNode(testComm);
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/* setup timers */
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for (i = 0; i < 12; i++) {
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timer[i] = (double *)malloc(params->repetitions * sizeof(double));
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if (timer[i] == NULL)
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ERR("malloc failed");
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}
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/* bind I/O calls to specific API */
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backend = aiori_select(params->api);
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@ -1257,9 +1300,9 @@ static void TestIoSys(IOR_test_t *test)
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params->stoneWallingWearOutIterations = params_saved_wearout;
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MPI_CHECK(MPI_Barrier(testComm), "barrier error");
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params->open = WRITE;
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timer[0][rep] = GetTimeStamp();
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timer[0] = GetTimeStamp();
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fd = backend->create(testFileName, params);
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timer[1][rep] = GetTimeStamp();
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timer[1] = GetTimeStamp();
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if (params->intraTestBarriers)
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MPI_CHECK(MPI_Barrier(testComm),
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"barrier error");
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@ -1268,20 +1311,20 @@ static void TestIoSys(IOR_test_t *test)
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"Commencing write performance test: %s",
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CurrentTimeString());
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}
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timer[2][rep] = GetTimeStamp();
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timer[2] = GetTimeStamp();
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dataMoved = WriteOrRead(params, & results[rep], fd, WRITE, &ioBuffers);
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if (params->verbose >= VERBOSE_4) {
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fprintf(out_logfile, "* data moved = %llu\n", dataMoved);
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fflush(out_logfile);
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}
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timer[3][rep] = GetTimeStamp();
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timer[3] = GetTimeStamp();
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if (params->intraTestBarriers)
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MPI_CHECK(MPI_Barrier(testComm),
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"barrier error");
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timer[4][rep] = GetTimeStamp();
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timer[4] = GetTimeStamp();
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backend->close(fd, params);
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timer[5][rep] = GetTimeStamp();
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timer[5] = GetTimeStamp();
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MPI_CHECK(MPI_Barrier(testComm), "barrier error");
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/* get the size of the file just written */
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@ -1296,7 +1339,7 @@ static void TestIoSys(IOR_test_t *test)
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WriteTimes(params, timer, rep, WRITE);
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ReduceIterResults(test, timer, rep, WRITE);
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if (params->outlierThreshold) {
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CheckForOutliers(params, timer, rep, WRITE);
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CheckForOutliers(params, timer, WRITE);
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}
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/* check if in this round we run write with stonewalling */
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@ -1396,9 +1439,9 @@ static void TestIoSys(IOR_test_t *test)
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DelaySecs(params->interTestDelay);
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MPI_CHECK(MPI_Barrier(testComm), "barrier error");
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params->open = READ;
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timer[6][rep] = GetTimeStamp();
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timer[0] = GetTimeStamp();
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fd = backend->open(testFileName, params);
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timer[7][rep] = GetTimeStamp();
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timer[1] = GetTimeStamp();
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if (params->intraTestBarriers)
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MPI_CHECK(MPI_Barrier(testComm),
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"barrier error");
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@ -1407,15 +1450,15 @@ static void TestIoSys(IOR_test_t *test)
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"Commencing read performance test: %s",
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CurrentTimeString());
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}
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timer[8][rep] = GetTimeStamp();
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timer[2] = GetTimeStamp();
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dataMoved = WriteOrRead(params, & results[rep], fd, operation_flag, &ioBuffers);
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timer[9][rep] = GetTimeStamp();
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timer[3] = GetTimeStamp();
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if (params->intraTestBarriers)
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MPI_CHECK(MPI_Barrier(testComm),
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"barrier error");
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timer[10][rep] = GetTimeStamp();
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timer[4] = GetTimeStamp();
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||||
backend->close(fd, params);
|
||||
timer[11][rep] = GetTimeStamp();
|
||||
timer[5] = GetTimeStamp();
|
||||
|
||||
/* get the size of the file just read */
|
||||
results[rep].aggFileSizeFromStat =
|
||||
|
@ -1430,7 +1473,7 @@ static void TestIoSys(IOR_test_t *test)
|
|||
WriteTimes(params, timer, rep, READ);
|
||||
ReduceIterResults(test, timer, rep, READ);
|
||||
if (params->outlierThreshold) {
|
||||
CheckForOutliers(params, timer, rep, READ);
|
||||
CheckForOutliers(params, timer, READ);
|
||||
}
|
||||
}
|
||||
|
||||
|
@ -1465,9 +1508,6 @@ static void TestIoSys(IOR_test_t *test)
|
|||
|
||||
if (hog_buf != NULL)
|
||||
free(hog_buf);
|
||||
for (i = 0; i < 12; i++) {
|
||||
free(timer[i]);
|
||||
}
|
||||
|
||||
/* Sync with the tasks that did not participate in this test */
|
||||
MPI_CHECK(MPI_Barrier(mpi_comm_world), "barrier error");
|
||||
|
@ -1831,7 +1871,8 @@ static IOR_offset_t WriteOrReadSingle(IOR_offset_t pairCnt, IOR_offset_t *offset
|
|||
* Write or Read data to file(s). This loops through the strides, writing
|
||||
* out the data to each block in transfer sizes, until the remainder left is 0.
|
||||
*/
|
||||
static IOR_offset_t WriteOrRead(IOR_param_t * test, IOR_results_t * results, void *fd, int access, IOR_io_buffers* ioBuffers)
|
||||
static IOR_offset_t WriteOrRead(IOR_param_t *test, IOR_results_t *results,
|
||||
void *fd, const int access, IOR_io_buffers *ioBuffers)
|
||||
{
|
||||
int errors = 0;
|
||||
IOR_offset_t transferCount = 0;
|
||||
|
@ -1910,73 +1951,3 @@ static IOR_offset_t WriteOrRead(IOR_param_t * test, IOR_results_t * results, voi
|
|||
}
|
||||
return (dataMoved);
|
||||
}
|
||||
|
||||
/*
|
||||
* Write times taken during each iteration of the test.
|
||||
*/
|
||||
static void
|
||||
WriteTimes(IOR_param_t * test, double **timer, int iteration, int writeOrRead)
|
||||
{
|
||||
char accessType[MAX_STR];
|
||||
char timerName[MAX_STR];
|
||||
int i, start = 0, stop = 0;
|
||||
|
||||
if (writeOrRead == WRITE) {
|
||||
start = 0;
|
||||
stop = 6;
|
||||
strcpy(accessType, "WRITE");
|
||||
} else if (writeOrRead == READ) {
|
||||
start = 6;
|
||||
stop = 12;
|
||||
strcpy(accessType, "READ");
|
||||
} else {
|
||||
ERR("incorrect WRITE/READ option");
|
||||
}
|
||||
|
||||
for (i = start; i < stop; i++) {
|
||||
switch (i) {
|
||||
case 0:
|
||||
strcpy(timerName, "write open start");
|
||||
break;
|
||||
case 1:
|
||||
strcpy(timerName, "write open stop");
|
||||
break;
|
||||
case 2:
|
||||
strcpy(timerName, "write start");
|
||||
break;
|
||||
case 3:
|
||||
strcpy(timerName, "write stop");
|
||||
break;
|
||||
case 4:
|
||||
strcpy(timerName, "write close start");
|
||||
break;
|
||||
case 5:
|
||||
strcpy(timerName, "write close stop");
|
||||
break;
|
||||
case 6:
|
||||
strcpy(timerName, "read open start");
|
||||
break;
|
||||
case 7:
|
||||
strcpy(timerName, "read open stop");
|
||||
break;
|
||||
case 8:
|
||||
strcpy(timerName, "read start");
|
||||
break;
|
||||
case 9:
|
||||
strcpy(timerName, "read stop");
|
||||
break;
|
||||
case 10:
|
||||
strcpy(timerName, "read close start");
|
||||
break;
|
||||
case 11:
|
||||
strcpy(timerName, "read close stop");
|
||||
break;
|
||||
default:
|
||||
strcpy(timerName, "invalid timer");
|
||||
break;
|
||||
}
|
||||
fprintf(out_logfile, "Test %d: Iter=%d, Task=%d, Time=%f, %s\n",
|
||||
test->id, iteration, (int)rank, timer[i][iteration],
|
||||
timerName);
|
||||
}
|
||||
}
|
||||
|
|
|
@ -96,7 +96,6 @@ enum OutputFormat_t{
|
|||
#define WRITECHECK 1
|
||||
#define READ 2
|
||||
#define READCHECK 3
|
||||
#define CHECK 4
|
||||
|
||||
/* verbosity settings */
|
||||
#define VERBOSE_0 0
|
||||
|
|
Loading…
Reference in New Issue