Commit Graph

604 Commits (master)

Author SHA1 Message Date
Julian M. Kunkel fcae6ff0b9 S3: Fine tuning, supporting bucket per file/dir and single bucket. 2020-06-30 20:02:36 +01:00
Julian M. Kunkel 87c9906d70 Error checking for NULL create/opens 2020-06-30 19:41:49 +01:00
Julian M. Kunkel 154cf2cde7 LibS3 version that stores fragments as one object each. 2020-06-30 18:43:44 +01:00
Julian M. Kunkel 2a3838c360 S3: Partial implementation. 2020-06-30 16:50:13 +01:00
Julian M. Kunkel 81a7a3ab81 Renamed existing S3 impl. which uses (apparently) outdated library. Added dummy support for libS3 with library search. 2020-06-30 13:41:59 +01:00
Julian M. Kunkel 3a9bd7828d Ported PMDK API. 2020-06-30 13:12:44 +01:00
Julian M. Kunkel 82417128cd Extracted file size routine that is replicated in each module into IOR removing the MPI dependency from AIORI. 2020-06-30 12:33:56 +01:00
Julian M. Kunkel 3395fc621c Moved GetFileSize into CheckFileSize, starting to simplify get_file_size (too much replication in modules). 2020-06-30 12:03:05 +01:00
Julian M. Kunkel 5a5b90cdaa Run existing check to allow only supported backends in mdtest. 2020-06-30 11:17:46 +01:00
Julian M. Kunkel 3e6bfd2db7 Added missing header info. 2020-06-29 20:58:45 +01:00
Julian M. Kunkel 03dbb20594 MDTest changed verification pattern. Read now always checks the first byte/8 bytes for the signature (item number).
Added also --verify-write option which performs a read immediately after a write. Supports #206
2020-06-29 20:15:14 +01:00
Julian M. Kunkel df3f7082d8 MDTest: Added warnings/errors for errorneous read pattern #206 2020-06-28 17:21:24 +01:00
Julian M. Kunkel 145c71f7c3 Trivial cleanup: Extracted debug-related stuff into new header. 2020-06-28 17:16:56 +01:00
Julian M. Kunkel 38b1752bda JSON issue with results. Fix for #233. 2020-06-25 14:37:52 +01:00
Julian M. Kunkel 0bffd14de7 Added --warningAsErrors option to IOR and MDTest and refactored WARNINGs in IOR. #174 2020-06-24 11:13:12 +01:00
Julian M. Kunkel c55848f14d Bugfix based on the pull request for fix-189. Should fix #189. 2020-06-24 10:15:31 +01:00
Julian Kunkel d5de9bcc77
Merge branch 'master' into master 2020-06-24 09:50:03 +01:00
Julian Kunkel 6a88b37171
Merge branch 'master' into fix-194 2020-06-24 09:43:37 +01:00
Mohamad Chaarawi b4a54c34e8 Merge branch 'master' into fix-modules
Conflicts:
	src/aiori-DAOS.c
	src/aiori-DFS.c
2020-06-11 19:55:23 +00:00
Mohamad Chaarawi e08314f571 update DFS and DAOS drivers to new aiori module interface.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-06-11 17:26:58 +00:00
Julian M. Kunkel eb2cd27fac Removed offset from IOR structure. 2020-06-10 17:47:07 +01:00
Sven Breuner c828a0f32c mdtest: use correct number of bytes for posix_memalign of read buffer
Fixes a typo in initial posix_memalign commit for DirectIO support.
2020-06-03 01:22:44 +03:00
Sven Breuner 3eb488939d mdtest: allocate aligned buffers to support DirectIO 2020-06-03 00:30:38 +03:00
Mohamad Chaarawi 3623f3b8bd DFS: allow multiple IO phases when ior_run() is called
- init/fini can be made multiple times
- reset tunables on fini so they can change on a re-init

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-05-31 16:20:58 +00:00
Julian M. Kunkel 8fa8ef0c02 Call backend statfs() instead of only POSIX-specific variant. 2020-05-31 13:30:31 +01:00
Julian M. Kunkel 5663593919 Moved generic IOR information to "hint" structure. Backends should only use the "hints" if set. 2020-05-31 12:50:03 +01:00
Julian M. Kunkel 8098c3740a Refactored fd into aiori_fd_t for type safety. 2020-05-31 12:12:49 +01:00
Julian M. Kunkel c4c19d3245 Fixed type typo in name. 2020-05-31 11:58:34 +01:00
Julian M. Kunkel 294b8891e6 Created dummy option type to provide type safety. Fixed various call issues for options. 2020-05-31 11:50:15 +01:00
Julian M. Kunkel e91b79cea0 Moved Lustre/GPFS/BeeGFS options into POSIX backend. Needs testing. Additional minor fixes. 2020-05-30 20:09:37 +01:00
Julian M. Kunkel 930ccdc68d Updated HDF5 to new module specification. 2020-05-30 19:01:20 +01:00
Julian M. Kunkel aa9e2ad815 MDTest updated for AIORI changes. 2020-05-30 18:30:26 +01:00
Julian M. Kunkel 1890aaaeb0 Started to move IOR specific knowledge out of AIORI.
For now, and compatibility, IOR options can still be set/internally accessed using the backends init_xfer_options.
This should be removed in the long run to strip away this dependency.
2020-05-30 18:19:48 +01:00
Julian M. Kunkel 2de4210311 Provide a string option parser function. 2020-05-29 16:05:42 +01:00
Mark Nelson edba70e99c aiori-CEPHFS: don't just unmount on close, release cmount too.
Signed-off-by: Mark Nelson <mnelson@redhat.com>
2020-05-28 20:42:26 -05:00
Mark Nelson efc6d49832 src/aiori-CEPHFS: Add option checks before init
Signed-off-by: Mark Nelson <mnelson@redhat.com>
2020-05-28 19:52:45 -05:00
Mark Nelson 8abb7a62dc src/aiori-CEPHFS: Add sync
Signed-off-by: Mark Nelson <mnelson@redhat.com>
2020-05-28 22:28:16 +00:00
Julian M. Kunkel 153b7aa60f Critical bugfix for ior API (used e.g. in IO500)
TODO: Check potential issue when using IOR scripts with different backends.
2020-05-28 21:18:44 +01:00
Julian M. Kunkel 4eb0ebec55 Add dummy sync to dummy backend. 2020-05-28 21:13:45 +01:00
Julian M. Kunkel 8c92a1b2ff Merge branch 'master' of github.com:hpc/ior 2020-05-28 20:12:06 +01:00
Julian M. Kunkel f97090a86b Typo fix. 2020-05-28 20:11:52 +01:00
Mohamad Chaarawi 28fae361f4 dfs: add DFS sync call
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-05-28 18:34:31 +00:00
Julian M. Kunkel 4b417ef1f3 IOR shouldn't fail if it cannot determine file system sizes but warn. Functionality should presumably be moved into AIORI backends. 2020-05-28 19:05:41 +01:00
Julian M. Kunkel a536649abb Clarified some issues in the test framework and added example test. #219 2020-05-20 17:46:35 +01:00
Julian M. Kunkel 48eb1880e9 For better testing: Fixed fake tasks per node to work with MPI3, added environment variable to fake num nodes. 2020-04-21 10:35:53 +01:00
Julian Kunkel 8bc9a12f80
Merge pull request #221 from daos-stack/mschaara/dfs_l2g
DFS driver update to share DFS mount on init
2020-04-14 10:13:55 +01:00
Mohamad Chaarawi 1b8848ccbc Use l2g-g2l to share the dfs mount instead of opening by each rank.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-04-13 19:59:56 +00:00
Jean-Yves VET a21137be3e Display outlier host names
Display host names when using the -j argument (outlierThreshold) so
that IOR could help to better identify slow nodes:

WARNING: for client02, task 6, write elapsed transfer time is 65.738326
2020-03-17 16:31:56 +01:00
Glenn K. Lockwood 657ff8ad8f
Merge pull request #217 from markhpc/wip-aiori-cephfs
[RFC] src/aiori-CEPHFS: New libcephfs backend
2020-03-10 12:29:24 -07:00
Mark Nelson 9649a0c520 src/aiori-CEPHFS: New libcephfs backend
Signed-off-by: Mark Nelson <mnelson@redhat.com>
2020-03-10 10:19:41 -05:00
Julian M. Kunkel 9726aa0ce2 Bugfix API which doesn't set the AIORI backend. 2020-03-07 14:40:59 +00:00
Julian Kunkel f5ecb9d974
Merge pull request #215 from daos-stack/daos-devel
DAOS Driver: Update License & Align with 1.0 API changes
2020-02-26 19:13:48 +00:00
Mohamad Chaarawi 50a4ba0735 DAOS Driver: Update License & Align with 1.0 API changes
- License should inherit from IOR License.
- remove checksums from Array API
- add DFS dir oclass option

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-02-26 18:53:51 +00:00
Julian Kunkel ec8d246b33
Merge pull request #214 from markhpc/wip-ior-rados-mark
src/aiori-RADOS: Remove Direct IO option check.
2020-02-26 09:06:54 +00:00
Mark Nelson e363713c07 src/aiori-RADOS: Remove Direct IO option check.
Signed-off-by: Mark Nelson <mnelson@redhat.com>
2020-02-25 18:13:29 -06:00
Julian M. Kunkel c702a98376 Strict prototypes for AIORI 2019-12-22 11:21:40 +00:00
Julian M. Kunkel 6de5cdc6f9 Fixed wrong usage of platform, fixed printf output. 2019-12-21 14:14:27 +00:00
Julian M. Kunkel 240d5fae79 Trivial fix to ensure all functions are prototypes. 2019-12-21 11:19:02 +00:00
Julian M. Kunkel 73c5c0efc2 Fix for collective operations by Wolfgang Szoecs #210.
It does have performance implications but is only active if needed.
2019-12-19 13:43:38 +00:00
Jean-Yves VET 0666875df3 aiori-IME: Add support of sync and mknod in IME backend
This patch adds the support of sync (flush client page cache
for all opened files) and mknod in the IME backend.
2019-12-17 14:51:21 +01:00
Glenn K. Lockwood 7a2d307c74
Merge pull request #208 from jyvet/mknod
Fix confusing output of mknod
2019-12-16 12:38:13 -08:00
Jean-Yves VET 9da36abaca Fix confusing output of mknod
Context: mknod does not return a file descriptor.
2019-12-16 14:55:26 +01:00
Jean-Yves VET be48206e5f Fix compilation warnings 2019-12-16 14:51:10 +01:00
Julian Kunkel 3a34b2efb7
Merge pull request #200 from daos-stack/daos-devel
DAOS driver update
2019-11-13 10:38:28 +00:00
Mohamad Chaarawi acfd4673cc We only need to add dirs to the Hash in the DFS driver.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-11-13 00:09:03 +00:00
Adrian Jackson ddac5c8dbf
Merge pull request #3 from hpc/master
Bring fork up to date
2019-11-12 14:20:53 +00:00
Robert LeBlanc 47199e28dd Not sure why iops and latency are left out of the JSON job output. It is really useful information.
Signed-off by: Robert LeBlanc <robert@leblancnet.us>
2019-11-11 23:16:01 +00:00
Afrian Jackson 9c0926ef2a Moving fsync pmdk functionalty from persist to drain on the advice of the PMDK developers 2019-11-07 20:17:55 +00:00
Mohamad Chaarawi fbff9b6fb2 add DFS prefix option
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-11-07 18:01:07 +00:00
Adrian Jackson c24b2f156a
Merge pull request #2 from hpc/master
Merging in latest master changes
2019-11-05 15:00:47 +00:00
Afrian Jackson b4c85798bd Tidying up PMDK backend 2019-11-05 14:39:31 +00:00
Afrian Jackson 46c5d4e78d Adding in dual mount functionality for NVRAM within nodes 2019-11-05 14:37:54 +00:00
Afrian Jackson 817603f5d1 Updating copyright statement 2019-10-31 15:31:28 +00:00
Afrian Jackson fa25c31994 Adding PMDK functionality 2019-10-31 15:29:09 +00:00
Glenn K. Lockwood 3c7ac2df23
Merge pull request #196 from daos-stack/daos-devel
update DFS driver with new DAOS API changes.
2019-10-28 16:56:29 -07:00
Glenn K. Lockwood 4409082064
Merge pull request #188 from pkoutoupis/feature-global_default_dir_layout
Enable global default dir layout for subdirs in Lustre
2019-10-28 10:43:56 -07:00
Mohamad Chaarawi 92180e022d update DFS read/write APIs with new DAOS API changes
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-10-28 16:42:44 +00:00
jschwartz-cray ccba3b11e5
Merge branch 'master' into fix-194 2019-10-23 16:46:00 -06:00
Josh Schwartz 61333af822 Fix #194.
On previous versions of IOR (and most Linux CLI applications in general)
multiple flags can be combined such as -vvv to get verbose=3 rather than
having to specify each separately as -v -v -v.  This patch fixes this behavior.

It also fixes issues around handling of the verbose flag where the
output would never be printed as we were comparing verbose < VERBOSE_0
where verbose defaults to 0 and can only increase.
2019-10-23 16:17:37 -06:00
Julian Kunkel b334c3f6fd
Merge pull request #192 from daos-stack/daos-devel
fix -R option to do proper data verification
2019-10-16 16:20:43 +01:00
Mohamad Chaarawi dc82a1bf2f ior -R should memset the buffer being read, otherwise a read that does nothing
will report success in the data verification phase.

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-10-16 14:54:00 +00:00
Julian M. Kunkel a69a5916cf Hotfix for ior -F -u 2019-10-16 09:42:10 +01:00
Glenn K. Lockwood f40b0744ff
Merge pull request #187 from daos-stack/daos-devel
IOR: Add latency and IOPS numbers to each iteration.
2019-10-02 13:09:26 -07:00
Petros Koutoupis b3ecd756ce Implemented AC_CHECK_HEADERS fix in style of #190 2019-09-30 04:25:59 -07:00
Mohamad Chaarawi 2aea04c8cb fix some compiler warnings.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-21 22:43:20 +00:00
Mohamad Chaarawi fca0a62ccb update to new DAOS API for creating dfs containers.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-21 22:05:54 +00:00
Julian Kunkel 604598ab2f
Merge pull request #182 from jschwartz-cray/fix-181
Fix #181.
2019-09-19 16:53:41 +01:00
Mohamad Chaarawi 12284ae04a Add latency and iops numbers to each iteration.
- Latency reported is computed by taking the average latency of
  all ops from a single task, then taking the minimum of that
  between all tasks.

- IOPS is computed by taking the total number of ops across all
  tasks divided by the total access time to execute those ops.

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-10 18:49:32 +00:00
Mohamad Chaarawi c58ba8ffb5 add break that was accidentally removed
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-10 14:11:55 +00:00
Mohamad Chaarawi fe9d76ddf3 fix segfault when no API is specified to mdtest
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-09 22:03:55 +00:00
Mohamad Chaarawi 73dbda09c6 remove printf added
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-09 20:19:42 +00:00
Mohamad Chaarawi 5622aabf46 missed Makefile.am update
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-09 20:14:12 +00:00
Mohamad Chaarawi d332d586bf remove uneeded code and doc
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-09 20:07:55 +00:00
Mohamad Chaarawi e9dd5fe15e Merge branch 'master' into daos-devel
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>

Conflicts:
	configure.ac
	src/Makefile.am
	src/aiori-MPIIO.c
	src/aiori.c
	src/aiori.h
	src/ior.c
	src/mdtest.c
	src/option.c
2019-09-09 19:55:56 +00:00
Mohamad Chaarawi 57a16ddda8 - update debugging error checking in DFS.
- remove usleep() before daos_fini()
- fix README

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-09-09 19:14:35 +00:00
Julian Kunkel 0921556456
Merge pull request #184 from hpc/feature-aiori
Feature aiori
2019-09-09 15:20:43 +01:00
Petros Koutoupis 36d13d3b97 Enable global default dir layout for subdirs in Lustre 2019-09-02 22:26:12 -07:00
Julian M. Kunkel c83edfe39b Extracted check function into aiori. #24. #177 2019-09-01 15:59:52 +01:00
Julian Kunkel ced9b0183f
Merge pull request #172 from hpc/fix-168
Fix #168
2019-09-01 15:51:44 +01:00
Julian Kunkel 151102ff8f
Merge pull request #176 from otatebe/master
abstract I/O interface for Gfarm file system
2019-09-01 15:51:16 +01:00
Julian M. Kunkel e3db1759b2 Moded sync() to aiori backend. 2019-09-01 15:47:42 +01:00
Julian M. Kunkel 6de1ea3176 Merge branch 'feature-sync' into feature-aiori 2019-09-01 15:39:49 +01:00
Julian M. Kunkel 60a641f911 sync help corrected. 2019-09-01 15:29:12 +01:00
Julian M. Kunkel 10d3db1dc8 MDTest: fixing the memset() to account for the number of iterations. 2019-08-31 17:28:08 +01:00
Julian Kunkel 47695aea49
Merge pull request #180 from jschwartz-cray/fix-179
Fix #179.
2019-08-31 10:32:41 +01:00
Josh Schwartz 0e952f0f8c Fix #181.
On systems where numTasks is not evenly divisible by 'tasksPerNode' we were
seeing some nodes reading multiple files while others read none after
reordering.

Commonly all nodes have the same number of tasks but there is nothing
requiring that to be the case.  Imagine having 64 tasks running against 4
nodes which can run 20 tasks each.  Here you get three groups of 20 and one
group of 4.  On this sytem nodes running in the group of 4 were previously
getting tasksPerNode of 4 which meant they reordered tasks differently than
the nodes which got tasksPerNode of 20.

The key to fixing this is ensuring that every node reorders tasks the same
way, which means ensuring they all use the same input values.  Obviously on
systems where the number of tasks per node is inconsistent the reordering will
also be inconsistent (some tasks may end up on the same node, or not as far
separated as desired, etc.) but at least this way you'll always end up with a
1:1 reordering.

- Renamed nodes/nodeCount to numNodes
- Renamed tasksPerNode to numTasksOnNode0
- Ensured that numTasksOnNode0 will always have the same value regardless of
  which node you're on
- Removed inconsistently used globals numTasksWorld and tasksPerNode and
  replaced with per-test params equivalents
- Added utility functions for setting these values:
  - numNodes -> GetNumNodes
  - numTasks -> GetNumTasks
  - numTasksOnNode0 -> GetNumNodesOnTask0
- Improved MPI_VERSION < 3 logic for GetNumNodes so it works when numTasks is
  not evenly divisible by numTasksOnNode0
- Left 'nodes' and 'tasksPerNode' in output alone to not break compatibility
- Allowed command-line params to override numTasks, numNodes, and
  numTasksOnNode0 but default to using the MPI-calculated values
2019-08-30 16:45:03 -06:00
Josh Schwartz 4c3d96bfed Fix #179.
-u (uniqueDir) will once again use the full file path specified by the
client instead of truncating it.  This was caused by a broken sprintf
which was trying to read/write overlapping buffers.

From the glibc sprintf() documentation:
"The behavior of this function is undefined if copying takes place
between objects that overlap"
2019-08-30 15:31:23 -06:00
Josh Schwartz 0bd979637e Added some extra debug including ERRF, WARNF, and MPI_CHECKF format string macros. 2019-08-30 15:11:25 -06:00
Mohamad Chaarawi 32db1cd902 add timing for container close.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-08-29 03:24:48 +00:00
Mohamad Chaarawi 93730771fd add some verbose messages on finalize routines for DAOS and DFS drivers.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-08-28 17:01:51 +00:00
Julian M. Kunkel 4df051bf28 New option -Y to invoke the sync command. 2019-08-26 18:57:14 +01:00
Julian M. Kunkel a4068be551 Improved help for fsync. 2019-08-26 15:57:13 +01:00
Julian M. Kunkel 0d9f46e980 MDTest re-added the -Z option for compatibility (for now) and switched back behavior. 2019-08-15 16:49:46 +01:00
Julian M. Kunkel de3baf8861 MDTest: Document choice of 42. 2019-08-15 16:21:30 +01:00
Mohamad Chaarawi b3663bd29a add sleep depending on MPI rank to avoid all ranks calling daos_fini()
at once (issue with PSM2).

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-08-14 13:32:51 +00:00
Mohamad Chaarawi 1320aa279c add some barriers before cont close and destroy to make sure all
ranks are done.

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-08-12 16:04:20 +00:00
Mohamad Chaarawi 8cb878507e Add dfs chunk_size and oclass options.
update dfs_remove for API change.

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-08-12 14:25:05 +00:00
Axel Huebl 70e8b13d1d
Fix Last Free 2019-08-04 18:27:20 -05:00
Julian Kunkel da5f091afc
Merge pull request #169 from ax3l/fix-singleRankHeapBufferOverflow
Fix: Heap Buffer Overflow
2019-08-03 09:20:15 +01:00
Julian Kunkel 5e6a03442f
Merge pull request #170 from ax3l/fix-someMemleaks
Fix Some Memory Leaks; Thanks.
2019-08-03 09:19:08 +01:00
Julian M. Kunkel c4ff3d7c4e Trivial fix for #168 2019-08-03 09:12:48 +01:00
Mohamad Chaarawi f16ef9ace5 update dfs_lookup() call for extra parameter.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-08-03 05:07:13 +00:00
Axel Huebl b72b51be48
Fix: Heap Buffer Overflow
Fix a memory violation when run in serial.
2019-08-02 23:34:13 -05:00
Axel Huebl bfff0df8fd
Fix Some Memory Leaks
Fixing some memory leaks :)
2019-08-02 23:33:01 -05:00
Osamu Tatebe b1b66962ac incorrect warning 2019-08-02 13:03:59 +09:00
Julian M. Kunkel cf56715a5a Make sure that each read buffer contains an invalid first byte. 2019-08-01 18:33:44 +01:00
Julian M. Kunkel ce1ae750f6 MDtest: Support to verify the read operation with a default pattern. 2019-08-01 18:29:32 +01:00
Julian M. Kunkel df8355a9bc Added output of mdtest stonewall timer. 2019-08-01 17:57:45 +01:00
Julian M. Kunkel 061b5a860f Backmerged: New option: print rate AND time; improves debugging. 2019-08-01 17:54:11 +01:00
Julian M. Kunkel 6c0fadc2a9 Include performance when stonewall is hit to output. 2019-08-01 17:20:01 +01:00
John Bent 3890b71b54 Fixed issues and followed suggestions from Glenn's review of the PR 2019-08-01 09:42:03 +09:00
Mohamad Chaarawi 92939e4fbd update for DAOS API changes
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-07-31 17:22:20 +00:00
John Bent a3c37808da Made FAIL take variable args so we can pass printf like args to it 2019-07-28 11:17:11 -06:00
John Bent 0ffec67d2b Following Julian's suggestion about better naming 2019-07-28 10:25:42 -06:00
John Bent b2d486f749 Followed Andreas suggestion to replace escape double quotes within printf's with single quotes 2019-07-28 10:07:03 -06:00
John Bent 168a407793 Fixed inconsistent spacing that Andreas commented upon 2019-07-28 09:55:00 -06:00
John Bent 629ff810b7 Got IOR shifting to work regardless of whether node/task mapping is round-robin or contiguous 2019-07-27 15:27:20 -06:00
John Bent d69957e55b Final changes cleaning up the output messages 2019-07-27 14:31:49 -06:00
John Bent e767ef3de9 Remove extraneous print_help function that was causing people to have to edit the same string in two different locations 2019-07-27 13:26:39 -06:00
John Bent f6491fcd37 Cleaned up the verbose messages by creating a macro and a function 2019-07-27 13:22:15 -06:00
John Bent 9d6480d46e Fixed bug in the nstride calculation where only 0 was computing it correctly. Had to bcast it out 2019-07-27 11:30:07 -06:00
John Bent 945487f743 Better debug message when stat fails 2019-07-27 09:20:20 -06:00
John Bent 524d053be1 Making shift work in mdtest as well as it works in IOR and on a per-node basis.
Also added printing the nodemap so we can check the allocation.
2019-07-26 08:55:24 -06:00
John Bent 7981fc70b1 Changed the behavior of shift in mdtest to mimic that in IOR so that it shifts by _entire nodes_ not by ranks. 2019-07-25 19:18:52 -06:00
Julian M. Kunkel 76f6bb6e42 Abort when invalid options are set. 2019-07-24 00:29:58 +01:00
Mohamad Chaarawi 1c640716c7 Use MPI Info object for all MPI_File_open calls.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-07-08 21:31:00 +00:00
Mohamad Chaarawi ad61fdd89c add proper check for DAOS object class and exit if unknown.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-07-08 18:18:24 +00:00
Mohamad Chaarawi 04e3df0d42 use the daos provided function for name to object class
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-07-08 17:02:30 +00:00
Mohamad Chaarawi 52ed766df4 update DAOS and DFS drivers to new DAOS API changes.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-07-08 15:33:06 +00:00
Wei-keng Liao 3eb0f86640 Function ncmpi_get_file_info was first introduced in
PnetCDF version 1.2.0. Check PnetCDF library version,
so printing MPI-IO hints can be enabled for NCMPI.
2019-06-28 17:40:35 -05:00
Mohamad Chaarawi 9f9730d6fd should abort on daos init if pool/cont/svcl not specified.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-06-28 16:20:56 +00:00
Mohamad Chaarawi 2ae7c29de2 cache the parent dir in a hashtable so we don't have to do a lookup
on every access.

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-06-27 21:31:07 +00:00
Mohamad Chaarawi 960005351d update DAOS and DFS markings.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-06-25 22:41:30 +00:00
Mohamad Chaarawi 262d35d87e - Merge branch 'master' into daos-devel
- fix bugs with cont destroy.
- add destroy option to DFS driver
- share pool and container handle with DFS driver, and allow multi rank access

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>

Conflicts:
	src/ior.c
	src/mdtest.c
	src/option.c
	src/parse_options.c
2019-06-24 21:26:15 +00:00
Osamu Tatebe a822363ee0 style fix 2019-06-22 10:48:41 +09:00
Osamu Tatebe 6cae44b512 abstract I/O interface for Gfarm file system 2019-06-21 21:05:41 +09:00
Mohamad Chaarawi 915283bae8 update array_g2l usage with DAOS API change
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-06-17 20:38:02 +00:00
Mohamad Chaarawi af1aa627eb use d_ version of function instead of daos_ since some of those are
going to be removed from the DAOS API.

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-06-07 16:59:11 +00:00
Julian Kunkel cdaca2c591
Merge pull request #160 from hpc/fix-ime-157
Moving IME ODirect option into IME. #157
2019-05-28 08:41:26 +01:00
Julian M. Kunkel e4969b5af7 Fix for #159 (also slightly improved parsing for options, for portability between scripts also allow comment at the end of an option). 2019-05-23 12:47:43 +01:00
Julian M. Kunkel 1b3182904d Moving IME ODirect option into IME. #157 2019-05-23 09:54:10 +01:00
Julian M. Kunkel ed4c1d88d0 Fix missing initialization in MMAP options. 2019-05-23 09:31:05 +01:00
Gu Zheng a6f8388f9f add mknod support
Add new option '-k' to support file creation test with mknod,
which is widely used in lustre.

Signed-off-by: Gu Zheng <gzheng@ddn.com>
2019-05-23 13:41:46 +08:00
Vaclav Hapla 3d8893e507 Fix #155. Fixup 3a873ea fixing #150. 2019-05-22 15:25:27 +02:00
Julian M. Kunkel cf197d5e38 Moved broken collectiveMetadata option into HDF5 backend module. #154 2019-05-22 10:21:18 +01:00
Julian M. Kunkel c5c43c4f3c Changed the version name to alpha to differentiate. Now mdtest has the version number from IOR. 2019-05-16 21:25:34 +01:00
Julian M. Kunkel 3a873ea2b0 Fix #150. 2019-05-16 19:35:00 +01:00
Julian M. Kunkel 6abdcc363a Trivial fix for #149 2019-05-16 12:56:56 +01:00
Glenn K. Lockwood 9ead56c24e
Merge pull request #148 from hpc/fix-146
Moving options to submodules + fixes #146 + fixes #144
2019-05-14 14:32:37 -07:00
Julian M. Kunkel 30a1ca187b Bugfix by rmn1 for #147 and #112. 2019-05-14 14:55:11 +01:00
Julian M. Kunkel 54522315ec Fix #146; handling of hints. Why are GPFS hints special, remains unclear. 2019-05-08 14:02:40 +01:00
Julian M. Kunkel a9b0bf35bc Support MDTest verbosity >=5 prints behavior for all ranks instead of just rank 0 (which is enabled with verbosity level 3 as before) 2019-05-02 09:58:35 +01:00
Oliver Steffen e3afdb5ed5 beegfs: don't fail if output exists
Use existing output file if it has the desired stripe settings
(number of targets, chunk size)
2019-04-29 15:52:26 +02:00
Julian M. Kunkel 8fd755147a Fix for #144 2019-04-19 10:20:04 +01:00
Mohamad Chaarawi 5797624d56 fix bug in file delete and access where only rank 0 is calling those functions.
remove the bcasts for the error code since the other ranks are not calling it.

Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-04-15 22:14:33 +00:00
Julian M. Kunkel 27ac1b88af Removed verbose output. 2019-04-02 12:34:35 +01:00
Julian M. Kunkel 07217c93aa Bugfix for the parsing of flags. Backwards compatibility for direct IO. 2019-04-02 12:08:31 +01:00
Mohamad Chaarawi e295a4e45f remove printf of chunk size.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-04-01 22:58:00 +00:00
Mohamad Chaarawi 4a788a0c23 re-write the DAOS IOR driver to use the Array API
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-03-30 19:11:44 +00:00
Julian M. Kunkel 21405ed924 Updated MMap module to option parser. 2019-03-27 22:32:59 +00:00
Julian M. Kunkel b4fb80a69e Allowed option parser to reset flags (needed in scriptfiles). 2019-03-27 22:32:38 +00:00
Julian M. Kunkel 07ca5247d7 Checked proper IOR behavior for -f option. 2019-03-27 20:37:46 +00:00
Julian M. Kunkel 20e960d020 Support the setting of module-specific options per test. 2019-03-27 20:04:48 +00:00
Mohamad Chaarawi 8b23c50389 update dfs_open for API change to expose chunk size selection
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-03-22 16:53:34 +00:00
Mohamad Chaarawi 39eca1bb08 add DAOS_Access routine to check if a container exists before deleting it.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-03-14 21:17:37 +00:00
Julian Kunkel d49d345007
Merge pull request #137 from DDNStorage/memoryPerNode
Fix segfault with option memoryPerNode
2019-03-14 18:33:24 +00:00
Sylvain Didelot fabb1f4d3b Fix segfault with option memoryPerNode
optarg contains a NULL address, which causes a segfault in
NodeMemoryStringToBytes().
2019-03-14 19:20:18 +01:00
Mohamad Chaarawi c35f64237f initialize data and akey checksum to NULL since they are not being used.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-03-14 16:55:54 +00:00
Mohamad Chaarawi db19141c19 remove usage of GURT's D_GOTO from DFS plugin.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-03-01 20:41:01 +00:00
Jean-Yves VET 110153cf3a mdtest: Enable IME native interface
This patch makes mdtest allow IME native interface.
It also defines a generic way to enable mdtest with each
backend.
2019-02-12 15:50:51 +01:00
Jean-Yves VET c6abf85378 aiori-IME: Add support of statfs in IME backend
This patch adds the support of statfs in the IME backend.
It uses ime_native_statvfs call to fill the ior_aiori_statfs_t
structure.
2019-02-11 15:00:18 +01:00
Mohamad Chaarawi 29090df283 update DAOS and DFS drivers with new DAOS API changes.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-02-08 18:00:33 +00:00
Mohamad Chaarawi 2c87b5e0f5 Merge remote-tracking branch 'upstream/master' into daos
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>

Conflicts:
	src/aiori.c
	src/aiori.h
	src/ior.c
	src/mdtest-main.c
	src/mdtest.c
	src/option.c
2019-01-24 00:31:12 +00:00
Glenn K. Lockwood 4c1c73ecae add malloc check to fix 2019-01-23 16:02:58 -08:00
Julian M. Kunkel 20bb99e1b7 Potential fix for #127 => Segmentation fault due to memory protection. 2019-01-19 17:00:49 +00:00
Mohamad Chaarawi 334bf73797 remove transaction commit and options to do that.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-01-17 20:58:58 +00:00
Mohamad Chaarawi d2a0023765 remove epoch usage and rebase with latest DAOS API that switches to transactions.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2019-01-07 18:28:59 +00:00
Glenn K. Lockwood e71cded6c3
Merge pull request #124 from hpc/fix-hdf5
Bugfix for HDF5 plugin; readded collective_md.
2019-01-02 10:01:56 -08:00
Julian M. Kunkel 1dbca5c293 Bugfix for HDF5 plugin; readded collective_md. 2018-12-23 13:07:23 +00:00
Julian M. Kunkel ed421bcc7b Fixes that issue. Hopefully works for all combinations. 2018-12-20 21:08:55 +00:00