f345a78046
Removed dependency.
2021-01-20 15:00:33 +00:00
970c5ef139
Adjust complex tests for changed -z behavior.
2021-01-20 14:57:21 +00:00
40c6d97e72
Replaced MPI_COMM_WORLD where needed with testComm.
2021-01-20 14:35:06 +00:00
e4120d600d
Reduce the dependency to global MPI Communicator
2021-01-20 14:06:05 +00:00
58fbefbd33
Bugfix IOR offsetting (fix before was incomplete). ( #317 )
2021-01-19 23:19:01 +00:00
19ad73568a
Bugfix ior stonewalling case. ( #316 )
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* Bugfix ior stonewalling case.
2021-01-19 22:28:34 +00:00
3daf7a2d0f
Bugfix: valgrind memory issues ( #314 )
2021-01-19 21:23:30 +00:00
fa316d5d24
dfs: conditionally compile out svcl setting ( #313 )
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The SVCL argument is being removed from the DAOS API, so conditionally
compile out while maintaining backwards compatibility to versions where
it's still required.
2021-01-19 13:43:01 +00:00
b2089514e3
MDTest calculate min/max/mean across iterations #300 . ( #312 )
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The calculation per iteration first computes the value of the slowest process, i.e., highest time or lowest rate. This is then the value for the iteration.
Secondly, calculate the min/max/mean across iterations.
For tree operations, the value is identical to previous as only Rank 0 is involved.
2021-01-18 21:30:16 +00:00
33b70ecbc8
Fix MDTest multidir option to work with stonewall file. ( #308 )
2021-01-14 17:38:11 +00:00
4a96436928
MDTest convert FATAL to WARN ( #307 )
2021-01-14 16:41:56 +00:00
d339caa501
Updated test (illustration of an empty test) and distclean for make distcheck #304 ( #305 )
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Resolves #304
2021-01-04 10:50:38 -08:00
21bf5a5a12
NCMPI ported to current ADIO. Fixed autoconf #303 .
2020-12-25 16:49:04 +00:00
8de13884a7
HDFS module ported to current AIORI API and improved ( #302 )
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* HDFS module ported to current AIORI API and extended
* Added instructions how to build and run with a HDFS.
* Replaced read with pread to support offsets.
* Implemented HDFS MDTest API
* Improved sync semantics
2020-12-23 11:51:31 +00:00
6675cd50bf
aiori-DFS: stat should not be fatal
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ior now expects stat to not be fatal. update the DFS driver to not
exit if stat fails since the file can simply not exist.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-12-16 15:41:58 +00:00
0bd52884e8
added region and location to libs3 ( #295 )
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* added region and location to libs3
2020-12-11 13:05:24 +00:00
fbee4139d8
Merge pull request #292 from ofaaland/b-fix-mpi-checkf
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Do not execute functions twice in MPI_CHECKF
2020-12-04 09:20:21 +00:00
69e006dd89
IOR clarify return API.
2020-12-03 21:07:45 +00:00
073da08292
IOR: print overwrite check only if a write operation is requested.
2020-12-03 20:54:51 +00:00
231868505d
Do not execute functions twice in MPI_CHECKF
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Assigning MPI_STATUS to a local variable and then referring to the
local will ensure that the same value is used in both the conditional
expression and the call to MPI_Error_string.
Otherwise, when MPI_STATUS is a function call, like
MPI_CHECKF(fubar(), "%s", "error in fubar");
fubar() is called twice. If there are underlying intermittent errors,
the error code/message for the first call is lost, with confusing output
like this:
read 2206.18 17.27 145.93 262144 131072
0.272595 291.88 0.290829 292.41
ERROR: cannot access explicit, noncollective, MPI MPI_SUCCESS: no errors, (aiori-MPIIO.c:451)
2020-12-03 12:21:06 -08:00
a8ab766483
Merge pull request #270 from hpc/fix-offset-integration
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Fix offset integration
2020-12-03 12:08:53 +00:00
09d2c3511b
Merge pull request #289 from hpc/fix-ior-no-warn
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IOR add warning if file exists #273 . To stop on warnings, use existing flag --warningAsErrors
2020-12-02 10:41:44 +00:00
b417505dfd
Merge branch 'master' into fix-modules
2020-12-02 10:21:59 +00:00
f71a144b19
IOR raise warning for existing file once if not filePerProc.
2020-12-02 10:14:28 +00:00
938cf2771b
DFS: make use of collective open to share file handle
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- remove un-needed libdaos_common lib since DAOS driver is removed
- use default container object class when it's not specified
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-12-01 21:36:25 +00:00
da03ae5c9f
IOR add warning if file exists #273 . To stop on warnings, use existing flag --warningAsErrors
2020-12-01 18:24:09 +00:00
691324f17b
Merge pull request #287 from hpc/fix-warning
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Fix compiler issue with redefinition via typedef.
2020-12-01 17:44:14 +00:00
9dcf9f79e4
Moved barriers to right location.
2020-12-01 14:47:57 +00:00
546eb05d15
Rudimentary support for stonewall added, addresses #261 .
2020-12-01 14:45:07 +00:00
5825dbae35
Provide new option randomPrefill for random (-z access only) that prefill the file with the specified blocksize, e.g., 2m. See issue #270 .
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This option works so far only without stonewalling!
2020-12-01 13:58:40 +00:00
41184c69e2
mdtest: fix reference to unique_dir_per_task for builds --with-lustre
2020-12-01 01:22:31 -05:00
ae06908a93
Merge branch 'master' into fix-mdtest-iter
2020-11-30 14:16:41 +00:00
11c784c8bd
Integrate review feedback.
2020-11-28 10:40:41 +00:00
ae23523a70
Integrate review feedback
2020-11-28 10:34:20 +00:00
5799e4ef3a
MDTest remove unnede variable.
2020-11-27 18:02:14 +00:00
fd51654393
Readd check for mdtest for now.
2020-11-27 17:51:31 +00:00
fbf976351a
MDTest refactoring: move all global static variables into the global static structure.
2020-11-27 17:49:45 +00:00
ae8a11b42f
MDTest updated stonewall check.
2020-11-27 15:35:32 +00:00
7542e75c82
MDTest ignore verbose potential format overflows to be able to spot real errors.
2020-11-27 15:23:32 +00:00
980ab1dc97
Lustre stripping: Fix default value such that Lustre striping is only set if anything is changed.
2020-11-26 15:56:34 +00:00
4377aebcf8
Bugfix MDTest calculation of multiple iterations was incorrect.
2020-11-26 12:48:11 +00:00
ad6dfc5e63
Allow MDTest to print per proc.
2020-11-25 09:50:26 +00:00
02a47085ec
Bugfix: suboptimal name mapping was leading to accidential deletes in md-workbench.
2020-11-22 12:01:12 +00:00
b5891141d8
Move checks before inititalization.
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Add simple validation for S3.
2020-11-22 11:43:42 +00:00
5d489064d8
Merge pull request #271 from hpc/fix-statvfs
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Remove duplicated functionality between mdtest and IOR.
2020-11-13 09:24:24 +00:00
13f9721dbc
Merge pull request #267 from hpc/feature-md-workbench
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Feature: md-workbench
2020-11-10 19:05:20 +00:00
277f380139
Remove duplicated functionality between mdtest and IOR.
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Refactored the ShowFileSystemSize function.
2020-11-09 16:23:34 +00:00
306598db67
Bugfix memory issue in global options.
2020-11-06 11:40:31 +00:00
a59e98d7a6
Add error to indicate changed behavior to users
2020-11-06 10:39:16 +00:00
af0753d8ad
Random: last modifications.
2020-11-06 10:27:11 +00:00
a0e5e297d6
Create random for one block (1 segment) only to be repeated.
2020-11-06 09:52:35 +00:00
ad985af763
Location problem on non Linux systems.
2020-11-06 09:30:59 +00:00
0e91769328
aiori-Gfarm: sequel to #262 - sync interface ( #269 )
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* aiori-Gfarm: update to the new aiori interface
* aiori-Gfarm: Gfarm_sync
2020-11-06 09:15:39 +00:00
2d79efc0c5
Fix wait issue on MacOS
2020-11-05 19:13:08 +00:00
3ee3e9ad5c
Integrated sequential code into the benchmark main loop.
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A bit ugly but shows that the code logic hasn't changed.
2020-11-05 14:00:09 +00:00
75c08386a4
Bugfix porting error for performance stats.
2020-11-04 20:47:30 +00:00
c0ffdf44d0
Workbench API improved.
2020-11-04 20:25:27 +00:00
d9c74af8f3
Fix (accidently rename of option)
2020-11-04 19:27:39 +00:00
b5dfeea82a
Remove output for the API.
2020-11-04 18:04:46 +00:00
fb66e77072
Enable random seed to be stored. ( #268 )
2020-11-04 13:47:35 +00:00
4e452766b9
Enable random seed to be stored.
2020-11-04 12:48:46 +00:00
e1dd3103cf
Fix make dist for md-workbench.
2020-11-03 10:52:45 +00:00
cb397242f9
DAOS backend cleanup ( #266 )
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- remove legacy DAOS driver & update Readme.
- update configure options to remove cart requirement
- Optimize DFS file get_size
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-11-03 10:01:09 +00:00
82d20f2744
Basic API converted.
2020-11-02 20:12:15 +00:00
654b797788
Converted output to IOR output.
2020-11-02 19:34:15 +00:00
dc89a59371
Workbench, adjusting the interface to IOR tool interfaces.
2020-11-02 19:23:13 +00:00
d39ae556f0
Bugfixing md-workbench errors.
2020-11-02 19:04:27 +00:00
348754c87a
md-workbench code ported.
2020-11-02 18:45:53 +00:00
9ace15cce3
Workbench: further conversation.
2020-11-02 17:56:28 +00:00
c28ed6dc72
Partial conversion of existing md-workbench to IOR APIs.
2020-11-02 17:34:11 +00:00
4898badf48
Fix compiler issue with redefinition via typedef.
2020-10-29 10:38:33 +00:00
d750d323e3
JSON output. Remove duplicated keys. ( #265 )
2020-10-28 09:47:38 +00:00
dab62b57c8
fix JSON format, the end of Array object ( #264 )
2020-10-28 09:38:17 +00:00
077f4ef98d
aiori-IME: Fix init after finalize issue ( #263 )
2020-10-26 14:37:19 +00:00
7bc9680b85
aiori-Gfarm: update to the new aiori interface ( #262 )
2020-10-26 11:26:10 +00:00
65ddc53950
CSV output for IOR results ( #260 )
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This commit adds CSV output for IOR.
The output will just include the `Results` section.
All other sections are omitted, since it's hard to produce a useful csv
with all information included.
2020-10-09 09:35:01 +01:00
bd76b45ef9
Integrated comparison checks into CompareData() which prevents additi… ( #254 )
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* Integrated comparison checks into CompareData() which prevents additional buffer comparisons at the expense of some computation #249 .
* IOR: Added code documentation to warn people for changing the creation pattern but not the verification pattern.
2020-09-28 20:09:48 +01:00
8f14166a79
S3: removed unneded check. ( #258 )
2020-09-13 09:20:46 +01:00
e60801cf8e
Prefix S3 options correctly for S3-libs3 ( #257 )
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* Option renamed to be consistent
2020-09-13 08:52:02 +01:00
7c201c0d9c
HDF5: fix segfault in HDF5 driver after latest AIORI changes ( #255 )
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- the hints structure was not getting initialized in MPIIO when HDF5
backend is used. Since HDF5 utilizes the MPIIO backend, this causes
a segfault.
Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-09-02 18:12:17 +01:00
cc0ac50086
POSIX GFPS adjusted to new API #248 ( #253 )
2020-09-02 10:08:52 +01:00
af2429b47e
Fix s3-4c implementation ( #247 )
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* Ported S3-4c version to current AIORI interface.
* S3-4c: add crypto dependency
* S3: Store username/host in options.
2020-08-13 16:25:36 +01:00
4e2d179052
Detection of system features for number of sockets #245 ( #246 )
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* Configure checks for architecture-specific functions to detect nr of sockets. #245
2020-08-03 12:30:21 +01:00
47b63a8054
Merge pull request #243 from hpc/feature-aio
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Feature aio
2020-08-03 10:06:07 +01:00
db3d06ec80
remove comm from get size cb in DAOS driver
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Signed-off-by: Mohamad Chaarawi <mohamad.chaarawi@intel.com>
2020-07-22 19:39:11 +00:00
e3f302ca53
AIORI AIO check params updated.
2020-07-21 16:50:13 +01:00
e1741c188a
AIO plugin: missing reference to include.
2020-07-21 16:23:25 +01:00
f275671cc9
AIORI POSIX AIO support. Collect ops until granularity is reached, then submit pending IOs. Synchronize latest on close. Doesn't work with data verification and reuses the existing buffer. The implementation shows the potential AIO may have.
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Extract also the POSIX header from AIORI to allow better reuse. #240
2020-07-21 16:18:50 +01:00
5e465ac8bf
Option: merge function to supported AIORI module reuse.
2020-07-21 13:54:50 +01:00
4258e14c11
mdtest: Bugfix of changed behavior, can only remove dir if all children were deleted.
2020-07-21 09:31:19 +01:00
8ca388fc78
Merge branch 'feature-cleanup-aiori'
2020-07-21 09:26:03 +01:00
f005147c4d
aiori-IME: Update to new aiori interface
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This patch updates IME backend to support new aiori interface.
It also fixes some indentation issues.
2020-07-03 16:37:33 +02:00
49746b99d9
aiori-IME: Update to new aiori interface
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This patch updates IME backend to support new aiori interface.
It also fixes some indentation issues.
2020-07-03 14:48:17 +02:00
f280123d0b
Spelling fixes (found by codespell)
2020-07-03 09:16:30 +02:00
a12ed015a6
S3: better testing, stat is semi-fake, other functions aren't.
2020-07-02 16:40:20 +01:00
4f7350dc6a
MDTest remove testdir if created by MDTest.
2020-07-02 16:26:05 +01:00
fb9fa7cc9f
S3: Better cleanup.
2020-07-02 15:57:46 +01:00
fb8f43fcfe
Reduce verbosity for verification
2020-07-01 10:05:09 +01:00
371335195b
Initialize logfile for warnings if not set.
2020-07-01 09:42:13 +01:00
484cb420d2
Generate config file with build options
2020-07-01 09:19:10 +01:00
Julian M. Kunkel